Model Organism Encyclopedia of DNA Elements (modENCODE)

Public Data Sets>Model Organism Encyclopedia of DNA Elements (modENCODE)
A collection of data from the modENCODE project ( http://www.modencode.org )

Details

Submitted By: modENCODE DCC ( help@modencode.org )
Size: 5 TB
Created On: April 19, 2012 9:25 PM GMT
Last Updated: April 24, 2012 9:18 PM GMT
Model Organism Encyclopedia of DNA Elements (modENCODE)

The modENCODE data set (~5 TB total) is a comprehensive encyclopedia of genomic functional elements in the model organisms C. elegans (a simple worm) and D. melanogaster (the fruitfly). modENCODE is a consortium is formed by 11 primary projects, divided between worm and fly, spanning the domains of gene structure, mRNA and ncRNA expression profiling, transcription factor binding sites, histone modifications and replacement, chromatin structure, DNA replication initiation and timing, and copy number variation. The raw and interpreted data from this project is vetted by a data coordinating center (DCC) to ensure consistency and completeness. All the data is publicly available, with some restrictions on its use for 9 months following publication (see modENCODE Publication Policy).

The complete modENCODE data set is available on Amazon EC2 as a series of EBS snapshots, as well as a convenient Amazon Machine Image (AMI) with necessary tools to use the data. See the modENCODE tutorial to get started using these resources.

Name Amazon public snapshot ID Description
modENCODE 1 snap-1b90be61 modENCODE C. elegans interpreted data, part 2 (7 December 2011)
modENCODE 2 snap-b16f46cb modENCODE D. yakuba raw data, part 1 (5 September 2011)
modENCODE 3 snap-236e4759 modENCODE D. melanogaster raw data, part 1 (5 September 2011)
modENCODE 4 snap-ad6e47d7 modENCODE C. elegans signal data, part 1 (5 September 2011)
modENCODE 5 snap-ef614895 modENCODE D. mojavensis raw data, part 1 (5 September 2011)
modENCODE 6 snap-8d6148f7 modENCODE D. melanogaster interpreted data, part 1 (5 September 2011)
modENCODE 7 snap-6160491b modENCODE D. pseudoobscura signal data, part 1 (5 September 2011)
modENCODE 8 snap-93654ce9 modENCODE D. ananassae raw data, part 1 (5 September 2011)
modENCODE 9 snap-df725ba5 modENCODE C. elegans raw data, part 1 (5 September 2011)
modENCODE 10 snap-fd745d87 modENCODE C. elegans raw data, part 2 (5 September 2011)
modENCODE 11 snap-f549608f modENCODE C. elegans raw data, part 3 (5 September 2011)
modENCODE 12 snap-0b486171 modENCODE D. pseudoobscura raw data, part 1 (5 September 2011)
modENCODE 13 snap-e34b6299 modENCODE D. virilis raw data, part 1 (5 September 2011)
modENCODE 14 snap-cb4a63b1 modENCODE D. mojavensis signal data, part 1 (5 September 2011)
modENCODE 15 snap-d34f66a9 modENCODE D. melanogaster signal data, part 2 (5 September 2011)
modENCODE 16 snap-b74e67cd modENCODE C. elegans interpreted data, part 1 (5 September 2011)
modENCODE 17 snap-eb416891 modENCODE D. melanogaster raw data, part 2 (5 September 2011)
modENCODE 18 snap-c54069bf modENCODE D. simulans raw data, part 1 (5 September 2011)
modENCODE 19 snap-ad426bd7 modENCODE D. simulans raw data, part 2 (7 December 2011)
modENCODE 20 snap-73456c09 modENCODE D. melanogaster signal data, part 1 (5 September 2011)
modENCODE 21 snap-39446d43 modENCODE C. elegans raw data, part 4 (7 December 2011)
modENCODE 22 snap-3d466f47 modENCODE D. melanogaster signal data, part 3 (7 December 2011)
modENCODE 23 snap-bf466fc5 modENCODE C. elegans signal data, part 2 (7 December 2011)
modENCODE 24 snap-b75871cd modENCODE D. melanogaster raw data, part 3 (7 December 2011)
modENCODE 25 snap-075b727d modENCODE D. pseudoobscura raw data, part 2 (7 December 2011)
modENCODE 26 snap-4d5d7437 modENCODE D. melanogaster interpreted data, part 2 (7 December 2011)

If you wish to attach the modENCODE data to your own instance, please view the section "Attaching the modENCODE DataRoot to the Instance of your Choice" from the modENCODE tutorial. If you have questions, comments or suggestions, please contact help@modencode.org.

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