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Falcon Accelerated Genomics Pipelines

Falcon Accelerated Genomics Pipelines

By: Latest Version: 1.3.0

Product Overview

The Falcon Accelerated Genomics Pipelines (FAGP) are the accelerated version the GATK 3.x Best Practices pipelines for variant calling. Both the performance and cost of the pipelines is significantly improved with Falcon's acceleration technologies, with the support to AWS F1 instances. Same as the GATK Best Practices pipelines, the typical workflow starts with raw FASTQ sequence paired-end reads and proceeds to obtain a filtered set of variants that can be annotated for further analysis.
FAGP includes accelerated BWA alignment tools, samtools, picard, and GATK. The accelerated tools can produce identical results as the original open-source version.




Operating System

Linux/Unix, CentOS 7.4

Delivery Methods

  • Amazon Machine Image

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