AWS for Industries

Tag: open data

Example graph of protein data

Exploring the UniProt protein knowledgebase with AWS Open Data and Amazon Neptune

Example graph of protein data The Universal Protein Resource (UniProt) is a widely used resource of protein data that is now available through the Registry of Open Data on AWS. Its centerpiece is the UniProt Knowledgebase (UniProtKB), a central hub for the collection of functional information on proteins, with accurate, consistent and rich annotation. UniProtKB […]

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Enabling the aggregation and analysis of The Cancer Genome Atlas using AWS Glue and Amazon Athena

The Cancer Genome Atlas (TCGA) is a landmark cancer genomics program, producing molecular data for nearly 20,000 primary tumors and matched normal tissues from 11,328 patients across 33 cancer types. The TCGA includes germline and somatic variants, copy number variants, mRNA expression, miRNA expression, DNA methylation, and protein expression for most patients. In addition to […]

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Broad Institute gnomAD data now accessible on the Registry of Open Data on AWS

Co-authored by Grace Tiao, Associate Director of Computational Genomics at the Broad Institute and Erin Chu, DVM, Ph.D., Life Sciences Lead, AWS Open Data Program Today we announce that data from the Genome Aggregation Consortium (gnomAD) is available for the first time on Amazon Web Services (AWS) as part of the Registry of Open Data […]

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Calculating growing degree days using AWS Registry of Open Data

The selection of specific crops (corn, soybeans, wheat etc.) is dictated by the heat units and length of the growing season.  This is commonly calculated as Growing Degree Units.  The AWS Registry of Open Data contains global weather datasets dating back over 200 years enabling agricultural crop breeders in the seed/chemical/fertilizer business to optimize their […]

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