AWS HealthOmics resources
Sequence store now includes auto-calculated ETags for read sets
We are excited to announce that AWS HealthOmics now calculates Entity Tags (ETags) when ingesting into the sequence store.
Documentation
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User Guide
Learn how to use AWS HealthOmics in this step-by-step developer guide.
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API Reference
Read this reference guide for AWS HealthOmics APIs and parameters.
Tools and Tutorials
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Open Source Tools for AWS HealthOmics
Open source repository on Github with tools for working with AWS HealthOmics.
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Open Source Tutorials for AWS HealthOmics
Open source repository on Github with example code that demonstrates how to store, process, and query genomic and biological datasets using AWS HealthOmics.
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WDL Linter for AWS HealthOmics
Container image hosted in Amazon ECR public repositories that provides general linting and specific recommendations for WDL workflow definitions for use with AWS HealthOmics.
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Amazon ECR Helper for AWS HealthOmics
Open source CDK application that automates migrating container images for use with AWS HealthOmics Workflows.
Solutions
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Guidance for Migration & Storage of Sequence Data with AWS HealthOmics
This Guidance demonstrates how to import omics sequence data from Amazon Simple Storage Service (Amazon S3) into AWS HealthOmics Storage.
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Guidance for Multi-Modal Data Analysis with AWS Health and ML Services
This Guidance demonstrates how to set up an end-to-end framework to analyze multimodal healthcare and life sciences (HCLS) data.
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Guidance for Bioinformatics Workflows on AWS
This Guidance shows how you can build and run production-grade bioinformatics workflows at scale and use AWS services for automation, workflow analysis, storage, and operational and cost observability.
What's New
AWS HealthOmics announces support for reading sequence stores through Amazon S3 APIs
04/15/24
AWS HealthOmics now provides additional information for workflow runs
02/23/24
AWS HealthOmics now supports Ultima Genomics DeepVariant Ready2Run workflow
02/05/24
AWS HealthOmics sequence store now includes auto-calculated ETags for read sets
10/06/23
AWS HealthOmics is now available in Israel (Tel Aviv) Region
09/26/23
AWS HealthOmics now provides workflow run archiving and retention
08/30/23
AWS HealthOmics now supports versioning of annotation stores
08/15/23
AWS HealthOmics supports cross-account sharing of omics analytics stores
08/15/23
AWS HealthOmics now provides workflow run queuing
07/24/23
AWS HealthOmics achieves FedRAMP Moderate authorization
07/10/23
AWS HealthOmics now supports Common Workflow Language
06/30/23
AWS HealthOmics adds integration with Amazon EventBridge
05/16/2023
AWS HealthOmics adds pre-built bioinformatic workflows with predictable pricing
05/15/2023
AWS HealthOmics now supports direct upload to Omics storage and automatic variant data parsing
05/15/2023
AWS HealthOmics announces support for Graphical Processing Units for workflows
05/15/2023
AWS HealthOmics now enables batch variant store imports
03/30/23
AWS HealthOmics Supports PrivateLink & CloudFormation
02/01/23
Introducing AWS HealthOmics
11/29/22
Blog posts
Store omics data cost effectively at any scale with AWS HealthOmics
01/24/24
fMRI Data Preprocessing on AWS using AFNI and AWS HealthOmics
01/08/24
New Tools to Accelerate Workflow Migrations to AWS HealthOmics
12/13/23
Multimodal Data Analysis with AWS Health and Machine Learning Services
10/16/23
Secure Your Genomic Workflows and Data with AWS HealthOmics
10/09/23
AWS HealthOmics now supports Sentieon genomic analysis pipelines
05/15/23
Element Biosciences offers Bases2FASTQ as a Ready2Run workflow on AWS HealthOmics
05/15/23
Easily run NVIDIA Parabricks Ready2Run workflows on AWS HealthOmics
05/15/23
Part 2: Automated End-to-End Genomics Data Storage and Analysis using AWS HealthOmics
11/29/22
Part 1: Introducing AWS HealthOmics—from sequence data to insights, securely and at scale
11/29/22
Videos
AWS re:Invent 2023 - Omics innovation with AWS HealthOmics: Amgen’s path to faster results
AWS re:Invent 2023 - Building a precision medicine platform using AWS HealthOmics
AWS HealthOmics End to End Workshop - Presentation (43:27)
AWS On Air ft. AWS HealthOmics & Open Data (20:07)
Using AWS HealthOmics for Genomics End-to-End (2:03:06)
AWS On Air ft. Ready2Run Workflows on AWS HealthOmics (26:34)
A fast walk through AWS HealthOmics (12:47)
Integrate and derive insights from multi-modal health data (44:37)
Transform omics data into insights with AWS HealthOmics (38:56)