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    GenAI PubMed Summarizer

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    Deployed on AWS
    Rapidly validate Claude or other LLM workflows in GxP/HIPAA environments. Includes SOP templates, prompt-safety guidelines, and AWS audit logging recipes.

    Overview

    The TensorBio GenAI Summarizer for Life Sciences is an AWS-ready FastAPI/Claude-powered web application that enables scientists, biotech professionals, and research informatics teams to instantly summarize PubMed abstracts, PDFs, and text into structured, markdown-formatted scientific reports.

    Built by TensorBio Dynamics, LLC, this AMI runs out-of-the-box on AWS EC2 and integrates Anthropic's Claude-for-Life-Sciences reasoning capabilities for biomedical comprehension, regulatory translation, and experimental-protocol summarization.

    With this AMI, you can:

    Summarize PubMed papers into concise, citation-ready markdown summaries.

    • Upload and extract scientific insight from PDFs directly.

    • Convert research notes or methods into structured Protocol or regulatory templates.

    • Run your own Claude-backed summarizer privately, with your own Anthropic API key.

    • Use a sleek, responsive web interface (FastAPI + TailwindCSS) that works on desktop and mobile.

    The TensorBio Dynamics, LLC GenAI Summarizer is designed for life-science researchers, biotech data scientists, and clinical teams who want Claude's domain-trained understanding without data ever leaving their own AWS environment.

    Key Features

    • Claude-for-Life-Sciences Integration: Uses Anthropic's latest model (e.g., Claude 3.5 Haiku) with biomedical prompt libraries.

    • Self-hosted on AWS: Your data stays inside your account.

    • Built-in Templates: Switch between Standard Summary, Protocol Draft, or Regulatory Report.

    • PubMed, PDF, and Free-Text Modes.

    • Instant Markdown Output + Download.

    • Lightweight + Scalable: Runs on small t3 or t4g instances; no GPU required.

    Highlights

    • - Claude-for-Life-Sciences reasoning engine (Anthropic API) - Summarize PubMed, PDF, or text instantly in markdown - Generate experiment protocols or regulatory abstracts - 100% private, runs inside your own AWS account - Simple FastAPI backend, TailwindCSS interface - Ready to launch on EC2 (AMI pre-configured) - Bring-Your-Own-Anthropic-API-Key (BYOK) - Perfect for biologists, data scientists, and biotech R&D

    Details

    Delivery method

    Delivery option
    64-bit (x86) Amazon Machine Image (AMI)

    Latest version

    Operating system
    AmazonLinux 2023.9.20251020

    Deployed on AWS

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    Pricing

    GenAI PubMed Summarizer

     Info
    Pricing is based on actual usage, with charges varying according to how much you consume. Subscriptions have no end date and may be canceled any time.
    Additional AWS infrastructure costs may apply. Use the AWS Pricing Calculator  to estimate your infrastructure costs.

    Usage costs (2)

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    Dimension
    Cost/hour
    t3.medium
    Recommended
    $0.00
    t3.large
    $0.00

    Vendor refund policy

    This AMI is provided free of charge by TensorBio Dynamics, LLC. Since there are no fees associated with using this product, refunds do not apply. If you experience any technical issues, please contact contact@tensorbiodynamics.com  for assistance.

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    Legal

    Vendor terms and conditions

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    Usage information

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    Delivery details

    64-bit (x86) Amazon Machine Image (AMI)

    Amazon Machine Image (AMI)

    An AMI is a virtual image that provides the information required to launch an instance. Amazon EC2 (Elastic Compute Cloud) instances are virtual servers on which you can run your applications and workloads, offering varying combinations of CPU, memory, storage, and networking resources. You can launch as many instances from as many different AMIs as you need.

    Version release notes

    Release date: October 2025 Version: 1.0.0

    Summary:

    Initial public release of the TensorBio GenAI Summarizer for Life Sciences, self-hosted generative AI web app powered by Anthropic Claude for scientific text, PubMed abstracts, and PDF summarization.

    New in this release:

    • FastAPI + TailwindCSS frontend for a clean, responsive UX

    • Integrated Anthropic Claude-for-Life-Sciences models (Haiku 20241022)

    • Summarization modes: Standard, Protocol, and Regulatory

    • PubMed search and direct PMID summarization

    • PDF and free-text summarization

    • Markdown output with instant download

    • Modal-based summary display with sectioned results

    • Bring-your-own Anthropic API key (BYOK)

    • Lightweight architecture (works on t3.medium or larger, no GPU)

    • Ready for AWS Marketplace deployment (EBS-backed, BYOL)

    Known issues:

    Model availability depends on Anthropic API access (user-provided key).

    If API key is invalid or expired, requests will fail with 401 Unauthorized.

    PDF parsing quality may vary depending on document structure.

    Additional details

    Usage instructions

    Usage Instructions (AMI) Prerequisites

    a) An AWS account with permission to launch EC2 instances. b) Your Anthropic API key (keep it private). This key is required for the application to function.

    1. Launch the instance

    On this product page, click Continue to Subscribe, then Continue to Configuration.

    Choose your Region and Software Version, then click Continue to Launch.

    Under Choose Action, select Launch from EC2 and click Launch.

    In the EC2 launch wizard:

    Instance type: t3.small or larger

    VPC/Subnet: your default VPC and subnet

    Security group: allow TCP port 8080 from your IP (recommended). Optionally allow TCP port 22 (SSH) from your IP for troubleshooting.

    Key pair: optional (only needed if you plan to connect via SSH)

    1. Provide your Anthropic settings (no SSH required)

    In the same EC2 launch wizard, expand Advanced details, then User data, and paste the following script. Replace REPLACE_ME with your actual Anthropic API key.

    #!/bin/bash set -e

    Set required environment variables (no "export" needed for /etc/environment)

    cat >/etc/environment <<'EOF' CLAUDE_PROVIDER=anthropic ANTHROPIC_API_KEY=sk-ant-REPLACE_ME ANTHROPIC_MODEL=claude-3-5-haiku-20241022 EOF

    Reload environment for the running service and restart the app

    systemctl restart summarizer

    Click Launch instance.

    Note: You can update these values later by editing /etc/environment and running sudo systemctl restart summarizer.

    1. Access the application

    After the instance launches:

    In the EC2 console, open your instance details.

    Copy the Public IPv4 DNS or IP address.

    Open your web browser and go to:

    http://<your-public-dns>:8080/

    You will see the TensorBio GenAI Summarizer interface.

    You can:

    Summarize by PubMed ID, paste custom text, or upload a PDF.

    Download the generated summary in Markdown format.

    1. (Optional) Verify service health via SSH

    If you allowed SSH and selected a key pair:

    ssh -i <your-key.pem> ec2-user@<your-public-dns> sudo systemctl status summarizer # should show "active (running)"

    Troubleshooting

    Blank page or cannot connect: Ensure your security group allows inbound TCP 8080 from your IP, and that the instance is in a public subnet with an Internet Gateway.

    App runs but summarization fails: Confirm that you correctly set ANTHROPIC_API_KEY (without quotes) in /etc/environment, then run:

    sudo systemctl restart summarizer

    Changing the model: Edit /etc/environment and update the ANTHROPIC_MODEL value (for example, claude-3-5-sonnet-20240620), then restart the service.

    Resources

    Vendor resources

    Support

    Vendor support

    Support contact: contact@tensorbiodynamics.com  Response time: Within 24 hours

    AWS infrastructure support

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