The Boltz-2 NIM provides state-of-the-art biomolecular structure prediction and binding affinity prediction capabilities for combinations of proteins, RNA, DNA, and other molecules. Based on the Boltz-2 architecture, this NIM enables researchers to predict complex biomolecular structures with high accuracy and quantify molecular interactions, supporting a wide range of molecular configurations and binding studies.
Boltz-2 represents a significant advancement in computational biology, offering unprecedented capabilities for predicting:
Protein structures: Single and multi-chain protein complexes
Nucleic acid structures: DNA and RNA molecules in various configurations
Protein-nucleic acid complexes: Interactions between proteins and genetic material
Ligand binding and affinity prediction: Small molecule interactions with biomolecules, including predicted binding affinity scores
Modified residues: Post-translational modifications and chemical modifications
Constraint-guided predictions: Structure predictions conditioned on specified interaction pockets or contacts
The model supports both single-molecule predictions and complex multi-molecular assemblies, making it suitable for a wide range of research applications from basic structural biology to drug discovery.
Highlights
NIMs offer a performant, simple, portable, and enterprise-grade route for self-hosted AI applications. Four major advantages that NIMs offer for system administrators and developers are:
- Performance
- Increased productivity
- Portable deployment
- Enterprise-grade
AWS Marketplace now accepts line of credit payments through the PNC Vendor Finance program. This program is available to select AWS customers in the US, excluding NV, NC, ND, TN, & VT.
You pay by the hour based on the AWS instance type you run the model on. Billing is usage-based, so charges accrue only while an instance runs. Fourteen dimensions cover real-time inference across a range of GPU instance sizes, from smaller single-GPU hosts to larger multi-GPU hosts. One dimension covers batch-mode inference on a separate instance type. Larger instances carry higher hourly rates. You choose the instance that matches your throughput and latency needs, and pricing scales with the GPU capacity of that instance.
Top-of-mind questions for buyers
What does one billed host-hour cover on these instance types?
One host-hour is one hour of the model running on the chosen AWS instance. You pay for each hour an instance stays active, regardless of how many predictions you run. Charges accrue by wall-clock running time, not by the number of molecular structures predicted.
How does batch-mode inference differ from real-time inference for billing?
Both meter by host-hour, but batch mode runs on the ml.g5.12xlarge instance and processes prediction jobs in groups. Real-time mode runs across the range of GPU instances and returns results as requests arrive. You pick the mode matching your workload; each accrues hourly on its own instance.
Am I charged when an instance is stopped or idle?
Charges apply per host-hour only while the instance runs. A stopped instance stops accruing software charges. Idle running instances still accrue charges, since billing tracks running time rather than prediction activity. Stop instances when not in use to avoid ongoing hourly charges.
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An Amazon SageMaker model package is a pre-trained machine learning model ready to use without additional training. Use the model package to create a model on Amazon SageMaker for real-time inference or batch processing. Amazon SageMaker is a fully managed platform for building, training, and deploying machine learning models at scale.
Deploy the model on Amazon SageMaker AI using the following options:
Real-time inference
Deploy the model as an API endpoint for your applications. When you send data to the endpoint, SageMaker processes it and returns results by API response. The endpoint runs continuously until you delete it. You're billed for software and SageMaker infrastructure costs while the endpoint runs. AWS Marketplace models don't support Amazon SageMaker Asynchronous Inference. For more information, see Deploy models for real-time inference .
Batch transform
Deploy the model to process batches of data stored in Amazon Simple Storage Service (Amazon S3). SageMaker runs the job, processes your data, and returns results to Amazon S3. When complete, SageMaker stops the model. You're billed for software and SageMaker infrastructure costs only during the batch job. Duration depends on your model, instance type, and dataset size. AWS Marketplace models don't support Amazon SageMaker Asynchronous Inference. For more information, see Batch transform for inference with Amazon SageMaker AI .
The model accepts JSON requests with parameters on /invocations and /ping APIs that can be used to control the generated text. See examples and field descriptions below.
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