GenomeSuite Analyzer: Human Genome Structural Variant Caller

The GenomeSuite Analyzer Users Guide is available here: https://github.com/TheSequencingCenter/GenomeSuite-Analyzer/blob/main/docs/GenomeSuite_Analyzer_Users_Guide.pdf  To launch GenomeSuite Analyzer: Click Continue to Subscribe Click Continue to Configuration Choose a Region Click Continue to Launch Choose an EC2 Instance Type Choose a Subnet (us-east-1f) Choose a Security Group Choose a Key Pair Click Launch Click EC2 Console If you get an error message Insufficient Capacity (or similar), you have three options: 1) wait a few minutes and try again, 2) select a different availability zone (subnet) and try again, 3) select a different region and try again. Login to the running EC2 instance from your workstation with: ssh -i KeyPair.pem ubuntu@PublicIP where KeyPair.pem is your key pair filename and PublicIP is obtained from the EC2 Console. To run GenomeSuite Analyzer enter: ./analyzer -b bucketname -s samplename -f filetype -m modelname where bucketname is the name of the S3 bucket that contains sample files, samplename is an arbitrary name, filetype is either pod5, fast5 or bam and modelname is a dorado basecaller model name.