Sequence store now includes auto-calculated ETags for read sets
We are excited to announce that AWS HealthOmics now calculates Entity Tags (ETags) when ingesting into the sequence store.
Documentation
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User Guide
Learn how to use AWS HealthOmics in this step-by-step developer guide.
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API Reference
Read this reference guide for AWS HealthOmics APIs and parameters.
Tools and Tutorials
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Open Source Tools for AWS HealthOmics
Open source repository on Github with tools for working with AWS HealthOmics.
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Open Source Tutorials for AWS HealthOmics
Open source repository on Github with example code that demonstrates how to store, process, and query genomic and biological datasets using AWS HealthOmics.
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WDL Linter for AWS HealthOmics
Container image hosted in Amazon ECR public repositories that provides general linting and specific recommendations for WDL workflow definitions for use with AWS HealthOmics.
Solutions
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Guidance for Migration & Storage of Sequence Data with AWS HealthOmics
This Guidance demonstrates how to import omics sequence data from Amazon Simple Storage Service (Amazon S3) into AWS HealthOmics Storage.
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Guidance for Multi-Modal Data Analysis with AWS Health and ML Services
This Guidance demonstrates how to set up an end-to-end framework to analyze multimodal healthcare and life sciences (HCLS) data.
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Guidance for Bioinformatics Workflows on AWS
This Guidance shows how you can build and run production-grade bioinformatics workflows at scale and use AWS services for automation, workflow analysis, storage, and operational and cost observability.
What's New
AWS HealthOmics sequence store now includes auto-calculated ETags for read sets
10/06/23
AWS HealthOmics is now available in Israel (Tel Aviv) Region
09/26/23
AWS HealthOmics now provides workflow run archiving and retention
08/30/23
AWS HealthOmics now supports versioning of annotation stores
08/15/23
AWS HealthOmics supports cross-account sharing of omics analytics stores
08/15/23
AWS HealthOmics now provides workflow run queuing
07/24/23
AWS HealthOmics achieves FedRAMP Moderate authorization
07/10/23
AWS HealthOmics now supports Common Workflow Language
06/30/23
AWS HealthOmics adds integration with Amazon EventBridge
05/16/2023
AWS HealthOmics adds pre-built bioinformatic workflows with predictable pricing
05/15/2023
AWS HealthOmics now supports direct upload to Omics storage and automatic variant data parsing
05/15/2023
AWS HealthOmics announces support for Graphical Processing Units for workflows
05/15/2023
AWS HealthOmics now enables batch variant store imports
03/30/23
AWS HealthOmics Supports PrivateLink & CloudFormation
02/01/23
Introducing AWS HealthOmics
11/29/22
Blog posts
Multimodal Data Analysis with AWS Health and Machine Learning Services
10/16/23
Secure Your Genomic Workflows and Data with AWS HealthOmics
10/09/23
AWS HealthOmics now supports Sentieon genomic analysis pipelines
05/15/23
Element Biosciences offers Bases2FASTQ as a Ready2Run workflow on AWS HealthOmics
05/15/23
Easily run NVIDIA Parabricks Ready2Run workflows on AWS HealthOmics
05/15/23
Part 2: Automated End-to-End Genomics Data Storage and Analysis using AWS HealthOmics
11/29/22
Part 1: Introducing AWS HealthOmics—from sequence data to insights, securely and at scale
11/29/22
Videos
AWS HealthOmics End to End Workshop - Presentation (43:27)
AWS On Air ft. AWS HealthOmics & Open Data (20:07)
Using AWS HealthOmics for Genomics End-to-End (2:03:06)
AWS On Air ft. Ready2Run Workflows on AWS HealthOmics (26:34)
A fast walk through AWS HealthOmics (12:47)
Integrate and derive insights from multi-modal health data (44:37)
Transform omics data into insights with AWS HealthOmics (38:56)