Whiffle WINS50 Open Data on AWS

The Encyclopedia of DNA Elements (ENCODE) Consortium is an international collaboration of research groups funded by the National Human Genome Research Institute (NHGRI). The goal of ENCODE is to build a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells and circumstances in which a gene is active. ENCODE investigators employ a variety of assays and methods to identify functional elements. The discovery and annotation of gene elements is accomplished primarily by sequencing a diverse range of RNA sources, comparative genomics, integrative bioinformatic methods, and human curation. Regulatory elements are typically investigated through DNA hypersensitivity assays, assays of DNA methylation, and immunoprecipitation (IP) of proteins that interact with DNA and RNA, i.e., modified histones, transcription factors, chromatin regulators, and RNA-binding proteins, followed[...]

This dataset comprises pre-built indexes for the bioinformatics software Kaiju, which is used for taxonomic classification of metagenomic sequencing data. Various indexes for different source reference databases are available.

Lineage datasets for use with BUSCO software package. Each dataset contains HMM profiles for clade specific, universal, single-copy marker genes. Datasets are available across archaea, bacteria, eukaryota and virus domains. The repository also includes necessary data files for phylogenetic placement of an input assembly.

This data set contains reprocessed images depicting labels that indicate the sea ice surface category, created by processing IceBridge DMS L0 Raw Imagery with the Open Source Sea-ice Processing Algorithm. The images are provided as TIFF files (.tif). Additional metadata are provided as CSV text files (.csv), which are available as a single zip file named RDSISC4_metadata.zip. An orthorectified version of this data set is available as IceBridge-Related DMS-Derived L4 Sea Ice Surface Cover Classification Orthorectified Images. RDSISCO4 This data set contains reprocessed, orthorectified images depicting labels that indicate the sea ice surface category, created by processing IceBridge DMS L0 Raw Imagery (IODMS0) with the Open Source Sea-ice Processing Algorithm. Orthorectification was done using digital elevation models from the IceBridge DMS L3 Ames Stereo Pipeline Photogrammetric DEM (IODEM3) collection. The standard (non-orthorectified) images are available as IceBridge[...]