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    AllTheBacteria

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    Sold by: European Bioinformatics Institute 
    Open data
    |
    Deployed on AWS
    All bacterial isolate whole-genome sequencing data from INSDC, uniformly assembled, quality-controlled, annotated, and searchable.

    Overview

    All bacterial isolate whole-genome sequencing data from INSDC, uniformly assembled, quality-controlled, annotated, and searchable.

    Features and programs

    Open Data Sponsorship Program

    This dataset is part of the Open Data Sponsorship Program, an AWS program that covers the cost of storage for publicly available high-value cloud-optimized datasets.
    Learn more

    Pricing

    This is a publicly available data set. No subscription is required.

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    Legal

    Content disclaimer

    Vendors are responsible for their product descriptions and other product content. AWS does not warrant that vendors' product descriptions or other product content are accurate, complete, reliable, current, or error-free.

    Usage information

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    Delivery details

    AWS Data Exchange (ADX)

    AWS Data Exchange is a service that helps AWS easily share and manage data entitlements from other organizations at scale.

    Open data resources

    Available with or without an AWS account.

    How to use
    To access these resources, reference the Amazon Resource Name (ARN) using the AWS Command Line Interface (CLI). Learn more 
    Description
    Individual, compressed genome assemblies in .fasta format in a public S3 bucket.
    Resource type
    S3 bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::allthebacteria-assemblies
    AWS region
    eu-west-2
    AWS CLI access (No AWS account required)
    aws s3 ls --no-sign-request s3://allthebacteria-assemblies/
    Description
    Phylogenetically-compressed, batched xz archives of all genome assemblies in .fasta format in a public S3 bucket.
    Resource type
    S3 bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::allthebacteria-phylogeneticbatches
    AWS region
    eu-west-2
    AWS CLI access (No AWS account required)
    aws s3 ls --no-sign-request s3://allthebacteria-phylogeneticbatches/
    Description
    Metadata for each genome assembly, including taxonomic information, in a public S3 bucket.
    Resource type
    S3 bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::allthebacteria-metadata
    AWS region
    eu-west-2
    AWS CLI access (No AWS account required)
    aws s3 ls --no-sign-request s3://allthebacteria-metadata/
    Description
    A [LexicMap](https://github.com/shenwei356/LexicMap) index of all genome assemblies. This can be used for efficient sequence alignment against all genomes.
    Resource type
    S3 bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::allthebacteria-lexicmap
    AWS region
    eu-west-2
    AWS CLI access (No AWS account required)
    aws s3 ls --no-sign-request s3://allthebacteria-lexicmap/

    Resources

    Vendor resources

    View this dataset on Github