Open data
    |
    Deployed on AWS
    This page describes the COBRA (Classification Of Basal cell carcinoma, Risky skin cancers and Abnormalities) skin pathology dataset, which comprises over 7000 histopathology whole-slide-images related to the diagnosis of basal cell carcinoma skin cancer, the most commonly diagnosed cancer. The dataset includes biopsies and excisions and is divided into four groups. The first group contains about 2,500 BCC biopsies with subtype labels, while the second group includes 2,500 non-BCC biopsies with different types of skin dysplasia. The third group has 1,000 labelled risky cancer biopsies, including rare and dangerous types like melanoma, squamous cell carcinoma, and Merkel cell carcinoma. Finally, the fourth group contains 1,000 BCC excisions with or without free tumor margins, with 300 fully annotated. The dataset will be released over 2023 in stages, starting with the BCC and non-BCC biopsies, followed by BCC excisions, and finally the risky cancer biopsies.

    Overview

    This page describes the COBRA (Classification Of Basal cell carcinoma, Risky skin cancers and Abnormalities) skin pathology dataset, which comprises over 7000 histopathology whole-slide-images related to the diagnosis of basal cell carcinoma skin cancer, the most commonly diagnosed cancer. The dataset includes biopsies and excisions and is divided into four groups. The first group contains about 2,500 BCC biopsies with subtype labels, while the second group includes 2,500 non-BCC biopsies with different types of skin dysplasia. The third group has 1,000 labelled risky cancer biopsies, including rare and dangerous types like melanoma, squamous cell carcinoma, and Merkel cell carcinoma. Finally, the fourth group contains 1,000 BCC excisions with or without free tumor margins, with 300 fully annotated. The dataset will be released over 2023 in stages, starting with the BCC and non-BCC biopsies, followed by BCC excisions, and finally the risky cancer biopsies.

    Features and programs

    Open Data Sponsorship Program

    This dataset is part of the Open Data Sponsorship Program, an AWS program that covers the cost of storage for publicly available high-value cloud-optimized datasets.

    Pricing

    This is a publicly available data set. No subscription is required.

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    Usage information

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    Delivery details

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    Open data resources

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    How to use
    To access these resources, reference the Amazon Resource Name (ARN) using the AWS Command Line Interface (CLI). Learn more 
    Description
    Whole slide images with corresponding labels including skin cancer and basal cell carcinoma risk class.
    Resource type
    S3 bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::cobra-pathology
    AWS region
    us-west-2
    AWS CLI access (No AWS account required)
    aws s3 ls --no-sign-request s3://cobra-pathology/

    Resources

    Support

    Managed By

    Radboud University Medical Center

    How to cite

    COBRA was accessed on DATE from https://registry.opendata.aws/cobra .

    License

    CC BY-SA-NC 4.0

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