
Overview
SnpEff is a variant annotation and effect prediction tool that annotates and predicts the effects of genetic variants on genes and proteins (such as amino acid changes). It supports over 38,000 genomes and provides comprehensive genomic databases for variant annotation. The databases include reference genomes, gene annotations, protein sequences, and regulatory elements from trusted sources like ENSEMBL, RefSeq, and UCSC. SnpSift complements SnpEff by providing tools to annotate genomic variants using databases, filter large genomic datasets, and manipulate annotated variants. Together, these tools provide a complete solution for genomic variant analysis, supporting research in human genetics, cancer genomics, pharmacogenomics, and model organism studies.
Features and programs
Open Data Sponsorship Program
Pricing
This is a publicly available data set. No subscription is required.
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Delivery details
AWS Data Exchange (ADX)
AWS Data Exchange is a service that helps AWS easily share and manage data entitlements from other organizations at scale.
Open data resources
Available with or without an AWS account.
- How to use
- To access these resources, reference the Amazon Resource Name (ARN) using the AWS Command Line Interface (CLI). Learn more
- Description
- SnpEff databases for genomic variant annotation
- Resource type
- S3 bucket
- Amazon Resource Name (ARN)
- arn:aws:s3:::snpeff-public
- AWS region
- us-east-2
- AWS CLI access (No AWS account required)
- aws s3 ls --no-sign-request s3://snpeff-public/
Resources
Vendor resources
Support
Contact
Pablo Cingolani http://www.linkedin.com/in/pablocingolani
Managed By
How to cite
SnpEff & SnpSift Genomic Variant Annotation Databases was accessed on DATE from https://registry.opendata.aws/snpeff .