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    SnpEff & SnpSift Genomic Variant Annotation Databases

     Info
    Open data
    |
    Deployed on AWS
    SnpEff is a variant annotation and effect prediction tool that annotates and predicts the effects of genetic variants on genes and proteins (such as amino acid changes). It supports over 38,000 genomes and provides comprehensive genomic databases for variant annotation. The databases include reference genomes, gene annotations, protein sequences, and regulatory elements from trusted sources like ENSEMBL, RefSeq, and UCSC. SnpSift complements SnpEff by providing tools to annotate genomic variants using databases, filter large genomic datasets, and manipulate annotated variants. Together, these tools provide a complete solution for genomic variant analysis, supporting research in human genetics, cancer genomics, pharmacogenomics, and model organism studies.

    Overview

    SnpEff is a variant annotation and effect prediction tool that annotates and predicts the effects of genetic variants on genes and proteins (such as amino acid changes). It supports over 38,000 genomes and provides comprehensive genomic databases for variant annotation. The databases include reference genomes, gene annotations, protein sequences, and regulatory elements from trusted sources like ENSEMBL, RefSeq, and UCSC. SnpSift complements SnpEff by providing tools to annotate genomic variants using databases, filter large genomic datasets, and manipulate annotated variants. Together, these tools provide a complete solution for genomic variant analysis, supporting research in human genetics, cancer genomics, pharmacogenomics, and model organism studies.

    Features and programs

    Open Data Sponsorship Program

    This dataset is part of the Open Data Sponsorship Program, an AWS program that covers the cost of storage for publicly available high-value cloud-optimized datasets.

    Pricing

    This is a publicly available data set. No subscription is required.

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    Usage information

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    Delivery details

    AWS Data Exchange (ADX)

    AWS Data Exchange is a service that helps AWS easily share and manage data entitlements from other organizations at scale.

    Open data resources

    Available with or without an AWS account.

    How to use
    To access these resources, reference the Amazon Resource Name (ARN) using the AWS Command Line Interface (CLI). Learn more 
    Description
    SnpEff databases for genomic variant annotation
    Resource type
    S3 bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::snpeff-public
    AWS region
    us-east-2
    AWS CLI access (No AWS account required)
    aws s3 ls --no-sign-request s3://snpeff-public/

    Resources

    Support

    How to cite

    SnpEff & SnpSift Genomic Variant Annotation Databases was accessed on DATE from https://registry.opendata.aws/snpeff .