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Allen Cell Imaging Collections

Allen Cell Imaging Collections

This product is part of the AWS Open Data Sponsorship Program and contains data sets that are publicly available for anyone to access and use. No subscription is required. Unless specifically stated in the applicable data set documentation, data sets available through the AWS Open Data Sponsorship Program are not provided and maintained by AWS.

Description

This bucket contains multiple datasets (as Quilt packages) created by the Allen Institute for Cell Science. The types of data included in this bucket are listed below:

1) Field of view or cropped images of cells 2) Segmentations of structures in the images (e.g., boundaries of cells, DNA, other intracellular structures, etc.) 3) Processed versions of the above images and segmentations 4) Machine learning predictions and labels of the data listed above 5) Models trained on the previously listed data 6) Additional supporting non-image data related to the above listed data types (e.g., gene expression data, whole genome sequencing data, features derived from the images or model predictions, metadata) 7) Simulation, analysis, and visualization data of in silico cell structures, cells, and cell populations

External funding:

The generation of some datasets was supported by the National Human Genome Research Institute of the National Institutes under Award Number UM1HG011593. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.

How to cite

Allen Cell Imaging Collections was accessed on DATE from https://registry.opendata.aws/allen-cell-imaging-collections .

Update frequency
Biweekly
Support information

Contact: cells@alleninstitute.org

General AWS Data Exchange support

Resources on AWS

Description

Data files in a public bucket

Resource type
S3 Bucket
Amazon Resource Name (ARN)
arn:aws:s3:::allencell
AWS Region
us-east-1

AWS CLI Access (No AWS account required)

aws s3 ls --no-sign-request s3://allencell/

Usage examples

Publications