Sold by: The Broad Institute
Open data
|
Deployed on AWS
The Cell Painting Image Collection is a collection of freely
downloadable microscopy image sets. Cell Painting is an
unbiased high throughput imaging assay used to analyze
perturbations in cell models. In addition to the images
themselves, each set includes a description of the biological
application and some type of "ground truth" (expected results).
Researchers are encouraged to use these image sets as reference
points when developing, testing, and publishing new image
analysis algorithms for the life sciences. We hope that the
this data set will lead to a better understanding of which
methods are best for various biological image analysis
applications.
Overview
The Cell Painting Image Collection is a collection of freely downloadable microscopy image sets. Cell Painting is an unbiased high throughput imaging assay used to analyze perturbations in cell models. In addition to the images themselves, each set includes a description of the biological application and some type of "ground truth" (expected results). Researchers are encouraged to use these image sets as reference points when developing, testing, and publishing new image analysis algorithms for the life sciences. We hope that the this data set will lead to a better understanding of which methods are best for various biological image analysis applications.
Features and programs
Open Data Sponsorship Program
This dataset is part of the Open Data Sponsorship Program, an AWS program that covers the cost of storage for publicly available high-value cloud-optimized datasets.
Pricing
This is a publicly available data set. No subscription is required.
Legal
Content disclaimer
Vendors are responsible for their product descriptions and other product content. AWS does not warrant that vendors' product descriptions or other product content are accurate, complete, reliable, current, or error-free.
Delivery details
AWS Data Exchange (ADX)
AWS Data Exchange is a service that helps AWS easily share and manage data entitlements from other organizations at scale.
Open data resources
Available with or without an AWS account.
- How to use
- To access these resources, reference the Amazon Resource Name (ARN) using the AWS Command Line Interface (CLI). Learn more
- Description
- Images, extracted features and aggregated profiles are available as a S3 bucket
- Resource type
- S3 bucket
- Amazon Resource Name (ARN)
- arn:aws:s3:::cytodata
- AWS region
- us-east-1
- AWS CLI access (No AWS account required)
- aws s3 ls --no-sign-request s3://cytodata/
Resources
Vendor resources
Support
Contact
Post on https://forum.image.sc/ and tag with "cellpainting"
Managed By
The Broad Institute
How to cite
Cell Painting Image Collection was accessed on DATE from https://registry.opendata.aws/cell-painting-image-collection .
License
CC0 1.0 Universal (CC0 1.0) Public Domain Dedication
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The Cell Painting Gallery is a collection of image datasets created using the Cell Painting assay.
The images of cells are captured by microscopy imaging, and reveal the response of various labeled cell components to whatever treatments are tested, which can include genetic perturbations, chemicals or drugs, or different cell types.
The datasets can be used for diverse applications in basic biology and pharmaceutical research, such as identifying disease-associated phenotypes, understanding disease mechanisms, and predicting a drug’s activity, toxicity, or mechanism of action (Chandrasekaran et al 2020).
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