Open data
|
Deployed on AWS
The Cell Painting Gallery is a collection of image datasets created using the [Cell Painting](https://pubmed.ncbi.nlm.nih.gov/27560178/) assay.
The images of cells are captured by microscopy imaging, and reveal the response of various labeled cell components to whatever treatments are tested, which can include genetic perturbations, chemicals or drugs, or different cell types.
The datasets can be used for diverse applications in basic biology and pharmaceutical research, such as identifying disease-associated phenotypes, understanding disease mechanisms, and predicting a drug’s activity, toxicity, or mechanism of action ([Chandrasekaran et al 2020](https://carpenter-singh-lab.broadinstitute.org/files/anne/files/141_Chandrasekaran_NatRevDrugDiscov_2020.pdf)).
This collection is maintained by the [Carpenter–Singh lab](https://carpenter-singh-lab.broadinstitute.org/) and the [Cimini lab](https://cimini-lab.broadinstitute.org/) at the [Broad Institute](https://www.broadinstitute.or[...]
Overview
The Cell Painting Gallery is a collection of image datasets created using the Cell Painting assay. The images of cells are captured by microscopy imaging, and reveal the response of various labeled cell components to whatever treatments are tested, which can include genetic perturbations, chemicals or drugs, or different cell types. The datasets can be used for diverse applications in basic biology and pharmaceutical research, such as identifying disease-associated phenotypes, understanding disease mechanisms, and predicting a drug’s activity, toxicity, or mechanism of action (Chandrasekaran et al 2020 ). This collection is maintained by the Carpenter–Singh lab and the Cimini lab at the Broad Institute . A human-friendly listing of datasets, instructions for accessing them, and other documentation is at the corresponding GitHub page about the Gallery.
Features and programs
Open Data Sponsorship Program
This dataset is part of the Open Data Sponsorship Program, an AWS program that covers the cost of storage for publicly available high-value cloud-optimized datasets.
Pricing
This is a publicly available data set. No subscription is required.
Legal
Content disclaimer
Vendors are responsible for their product descriptions and other product content. AWS does not warrant that vendors' product descriptions or other product content are accurate, complete, reliable, current, or error-free.
Delivery details
AWS Data Exchange (ADX)
AWS Data Exchange is a service that helps AWS easily share and manage data entitlements from other organizations at scale.
Open data resources
Available with or without an AWS account.
- How to use
- To access these resources, reference the Amazon Resource Name (ARN) using the AWS Command Line Interface (CLI). Learn more
- Description
- Cell Painting data, comprising fluorescence microscopy cell images (TIFF), extracted features (CSV), and associated metadata (CSV and TXT).
- Resource type
- S3 bucket
- Amazon Resource Name (ARN)
- arn:aws:s3:::cellpainting-gallery
- AWS region
- us-east-1
- AWS CLI access (No AWS account required)
- aws s3 ls --no-sign-request s3://cellpainting-gallery/
- Description
- Notifications for new Cell Painting Gallery data
- Resource type
- SNS topic
- Amazon Resource Name (ARN)
- arn:aws:sns:us-east-1:309624411020:cellpainting-repository-object_created
- AWS region
- us-east-1
Resources
Vendor resources
Support
Managed By
Carpenter-Singh and Cimini Labs at the Broad Institute
How to cite
Cell Painting Gallery was accessed on DATE from https://registry.opendata.aws/cellpainting-gallery .
License
CC0 1.0 Universal (CC0 1.0) Public Domain Dedication, but please do cite the corresponding publication for each dataset, as listed here .
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