Sold by: NCBI at NLM
Open data
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Deployed on AWS
The NIH Sequence Read Archive (SRA), hosted by the [National Center for Biotechnology Information (NCBI) at the National Library of Medicine (NLM) stores sequencing data and alignment information from high-throughput next-generation sequencing platforms. SRA has conducted gene expression analysis of publicly released human and mouse RNA-Seq experiments to process raw RNA-seq reads into concise formats that summarize the expression results. The un-normalized feature counts for each SRA record are available in tab-delimited (*.tsv) format. The tsv files include two columns, the gene id and count. These counts facilitate differential gene expression analyses, particularly across studies and the entirety of the SRA corpus.
Overview
The NIH Sequence Read Archive (SRA), hosted by the [National Center for Biotechnology Information (NCBI) at the National Library of Medicine (NLM) stores sequencing data and alignment information from high-throughput next-generation sequencing platforms. SRA has conducted gene expression analysis of publicly released human and mouse RNA-Seq experiments to process raw RNA-seq reads into concise formats that summarize the expression results. The un-normalized feature counts for each SRA record are available in tab-delimited (*.tsv) format. The tsv files include two columns, the gene id and count. These counts facilitate differential gene expression analyses, particularly across studies and the entirety of the SRA corpus.
Features and programs
Open Data Sponsorship Program
This dataset is part of the Open Data Sponsorship Program, an AWS program that covers the cost of storage for publicly available high-value cloud-optimized datasets.
Pricing
This is a publicly available data set. No subscription is required.
Legal
Content disclaimer
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Delivery details
AWS Data Exchange (ADX)
AWS Data Exchange is a service that helps AWS easily share and manage data entitlements from other organizations at scale.
Open data resources
Available with or without an AWS account.
- How to use
- To access these resources, reference the Amazon Resource Name (ARN) using the AWS Command Line Interface (CLI). Learn more
- Description
- *.tsv files in a public s3 public. The files contain un-normalized feature counts for the SRA run accession listed in the file name. The scope of these records is human and mouse, bulk RNA-Seq data released in the non-controlled access portion of SRA.
- Resource type
- S3 bucket
- Amazon Resource Name (ARN)
- arn:aws:s3:::sra-rnaseq-analysis
- AWS region
- us-east-1
- AWS CLI access (No AWS account required)
- aws s3 ls --no-sign-request s3://sra-rnaseq-analysis/
Resources
Vendor resources
Support
Contact
Managed By
NCBI at NLM
How to cite
NCBI SRA Gene Feature RNA-Seq counts was accessed on DATE from https://registry.opendata.aws/ncbi-sra-rnaseq .
License
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