WashU Repeat Browser genomic and epigenomic profiles

DeepRM is an implementation service that deploys a pre-configured RNA modification detection workflow to your AWS account and guides your team through setup and execution. We configure the AWS HealthOmics shared workflow, walk you through data preparation and job submission, and provide ongoing technical support — so your team can run deep learning-based analyses directly within your own AWS environment.

The NIH Roadmap Epigenomics Mapping Consortium was launched with the goal of producing a public resource of human epigenomic data to catalyze basic biology and disease-oriented research. The project has generated high-quality, genome-wide maps of several key histone modifications, chromatin accessibility, DNA methylation and mRNA expression across 100s of human cell types and tissues. To see what data is available, please check the directory listing: https://roadmapepigenomics.s3.us-west-2.amazonaws.com/index.html.

The UCSC Genome Browser is an online graphical viewer for genomes, a genome browser, hosted by the University of California, Santa Cruz (UCSC). The interactive website offers access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations. This dataset is a copy of the MySQL tables in MyISAM binary and tab-sep format and all binary files in custom formats, sometimes referred as 'gbdb'-files. Data from the UCSC Genome Browser is free and open for use by anyone. However, every genome annotation track has been created by an academic research group, or, in a few cases, by commercial companies. Please acknowledge them by citing them. The information can be found by going to https://genome.ucsc.edu, selecting the respective genome assembly and clicking on the data track. At the end of the documentation, we provide a list of references and acknowledgements.

The Human Pangenome Reference Consortium (HPRC) Release 2 represents a landmark achievement in genomics, providing high-quality phased genome assemblies from over 200 individuals with comprehensive functional genomics data. The HPRC Epigenome Browser provides researchers a way to explore all epigenomics data generated by release 2. The HPRC Epigenome Browser (HPRCEB) is a modern, interactive web portal that democratizes access to HPRC Release 2 epigenomics data through an intuitive interface supporting genome selection, data visualization, and bulk download capabilities. The portal integrates genome assemblies, DNA methylation profiles, gene expression data, and chromatin accessibility measurements across diverse populations, enabling researchers to efficiently identify and retrieve datasets matching their specific research needs.