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UCSC Genome Browser Sequence and Annotations

Provided by: University of California Santa Cruz Genome Institute, part of the AWS Open Data Sponsorship Program

UCSC Genome Browser Sequence and Annotations

Provided by: University of California Santa Cruz Genome Institute, part of the AWS Open Data Sponsorship Program

This product is part of the AWS Open Data Sponsorship Program and contains data sets that are publicly available for anyone to access and use. No subscription is required. Unless specifically stated in the applicable data set documentation, data sets available through the AWS Open Data Sponsorship Program are not provided and maintained by AWS.

Description

The UCSC Genome Browser is an online graphical viewer for genomes, a genome browser, hosted by the University of California, Santa Cruz (UCSC). The interactive website offers access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations. This dataset is a copy of the MySQL tables in MyISAM binary and tab-sep format and all binary files in custom formats, sometimes referred as 'gbdb'-files. Data from the UCSC Genome Browser is free and open for use by anyone. However, every genome annotation track has been created by an academic research group, or, in a few cases, by commercial companies. Please acknowledge them by citing them. The information can be found by going to https://genome.ucsc.edu , selecting the respective genome assembly and clicking on the data track. At the end of the documentation, we provide a list of references and acknowledgements.

License

Public domain, some tracks require attribution 

Documentation

https://hgdownload.soe.ucsc.edu/downloads.html 

How to cite

UCSC Genome Browser Sequence and Annotations was accessed on DATE from https://registry.opendata.aws/ucsc-genome-browser .

Update frequency
Monthly
Support information

Managed by: University of California Santa Cruz Genome Institute

Contact: https://genome.ucsc.edu/contacts.html 

General AWS Data Exchange support
Contact Us 

Resources on AWS

Description

https://genome.ucsc.edu/FAQ/FAQformat.html 

Resource type
S3 Bucket
Amazon Resource Name (ARN)
arn:aws:s3:::genome-browser
AWS Region
us-east-1

AWS CLI Access (No AWS account required)

aws s3 ls --no-sign-request s3://genome-browser/

Usage examples

Links

View this dataset on Github 

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