Sold by: Galaxy and Bioconductor Projects
Open data
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Deployed on AWS
This dataset provides genomic reference data and software packages for use with [Galaxy](https://galaxyproject.org/) and [Bioconductor](https://bioconductor.org/) applications. The reference data is available for hundreds of reference genomes and has been formatted for use with a variety of tools. The available configuration files make this data easily incorporable with a local Galaxy server without additional data preparation. Additionally, Bioconductor's AnnotationHub and ExperimentHub data are provided for use via R packages through which the data can be downloaded and installed into any R environment.
Overview
This dataset provides genomic reference data and software packages for use with Galaxy and Bioconductor applications. The reference data is available for hundreds of reference genomes and has been formatted for use with a variety of tools. The available configuration files make this data easily incorporable with a local Galaxy server without additional data preparation. Additionally, Bioconductor's AnnotationHub and ExperimentHub data are provided for use via R packages through which the data can be downloaded and installed into any R environment.
Features and programs
Open Data Sponsorship Program
This dataset is part of the Open Data Sponsorship Program, an AWS program that covers the cost of storage for publicly available high-value cloud-optimized datasets.
Pricing
This is a publicly available data set. No subscription is required.
Legal
Content disclaimer
Vendors are responsible for their product descriptions and other product content. AWS does not warrant that vendors' product descriptions or other product content are accurate, complete, reliable, current, or error-free.
Delivery details
AWS Data Exchange (ADX)
AWS Data Exchange is a service that helps AWS easily share and manage data entitlements from other organizations at scale.
Open data resources
Available with or without an AWS account.
- How to use
- To access these resources, reference the Amazon Resource Name (ARN) using the AWS Command Line Interface (CLI). Learn more
- Description
- The data is organized as versioned objects for reference data, and data packages for use with the R programming language. The reference data is primarily intended for use with the Galaxy application, and has been formatted for easy configuration. In the future, additional formats may be provided. The packages as well as the AnnotationHub and ExperimentHub data are intended for use with R / Bioconductor.
- Resource type
- S3 bucket
- Amazon Resource Name (ARN)
- arn:aws:s3:::biorefdata
- AWS region
- ap-southeast-2
- AWS CLI access (No AWS account required)
- aws s3 ls --no-sign-request s3://biorefdata/
Resources
Vendor resources
Support
Managed By
Galaxy and Bioconductor Projects
How to cite
Open Bioinformatics Reference Data for Galaxy was accessed on DATE from https://registry.opendata.aws/open-bio-ref-data .
License
Public Domain
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