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    Medical Segmentation Decathlon

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    Open data
    |
    Deployed on AWS
    With recent advances in machine learning, semantic segmentation algorithms are becoming increasingly general purpose and translatable to unseen tasks. Many key algorithmic advances in the field of medical imaging are commonly validated on a small number of tasks, limiting our understanding of the generalisability of the proposed contributions. A model which works out-of-the-box on many tasks, in the spirit of AutoML, would have a tremendous impact on healthcare. The field of medical imaging is also missing a fully open source and comprehensive benchmark for general purpose algorithmic validation and testing covering a large span of challenges, such as: small data, unbalanced labels, large-ranging object scales, multi-class labels, and multimodal imaging, etc. This challenge and dataset aims to provide such resource through the open sourcing of large medical imaging datasets on several highly different tasks, and by standardising the analysis and validation process.

    Overview

    With recent advances in machine learning, semantic segmentation algorithms are becoming increasingly general purpose and translatable to unseen tasks. Many key algorithmic advances in the field of medical imaging are commonly validated on a small number of tasks, limiting our understanding of the generalisability of the proposed contributions. A model which works out-of-the-box on many tasks, in the spirit of AutoML, would have a tremendous impact on healthcare. The field of medical imaging is also missing a fully open source and comprehensive benchmark for general purpose algorithmic validation and testing covering a large span of challenges, such as: small data, unbalanced labels, large-ranging object scales, multi-class labels, and multimodal imaging, etc. This challenge and dataset aims to provide such resource through the open sourcing of large medical imaging datasets on several highly different tasks, and by standardising the analysis and validation process.

    Features and programs

    Open Data Sponsorship Program

    This dataset is part of the Open Data Sponsorship Program, an AWS program that covers the cost of storage for publicly available high-value cloud-optimized datasets.

    Pricing

    This is a publicly available data set. No subscription is required.

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    Usage information

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    Delivery details

    AWS Data Exchange (ADX)

    AWS Data Exchange is a service that helps AWS easily share and manage data entitlements from other organizations at scale.

    Open data resources

    Available with or without an AWS account.

    How to use
    To access these resources, reference the Amazon Resource Name (ARN) using the AWS Command Line Interface (CLI). Learn more 
    Description
    Ten tasks from the Medical Segmentation Decathlon Challenge. Tasks are organized by organ system and pathology, as follow, Liver Tumours; Brain Tumours; Hippocampus; Lung Tumours; Prostate; Cardiac; Pancreas Tumour; Colon Cancer; Hepatic Vasculature; Spleen. Tasks are provided in both tar.gz and uncompressed format.
    Resource type
    S3 bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::msd-for-monai
    AWS region
    us-west-2
    AWS CLI access (No AWS account required)
    aws s3 ls --no-sign-request s3://msd-for-monai/
    Description
    This is a mirror of s3://msd-for-monai in eu-west-2.
    Resource type
    S3 bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::msd-for-monai-eu
    AWS region
    eu-west-2
    AWS CLI access (No AWS account required)
    aws s3 ls --no-sign-request s3://msd-for-monai-eu/

    Resources

    Support

    How to cite

    Medical Segmentation Decathlon was accessed on DATE from https://registry.opendata.aws/msd .

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