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    The Impact of Variation on Function Consortium (IGVF)

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    Open data
    |
    Deployed on AWS
    The IGVF (Impact of Genomic Variation on Function) Consortium aims to understand how genomic variation affects genome function, which in turn impacts phenotype. The NHGRI is funding this collaborative program that brings together teams of investigators who will use state-of-the-art experimental and computational approaches to model, predict, characterize and map genome function, how genome function shapes phenotype, and how these processes are affected by genomic variation. These joint efforts will produce a catalog of the impact of genomic variants on genome function and phenotypes. The Data Corpus consists of single-cell Genomics experiments (both single modal, and multimodal, typically snRNA-seq and snATAC-seq), Characterization experiments using Massively Parallel Reporter Assays (MPRAs) and CRISPR-screens along with a variety of protein mutatation assays, and Predictive Models. There are a huge variety of files in IGVF that are stored in the AWS OpenData Set so we rec[...]

    Overview

    The IGVF (Impact of Genomic Variation on Function) Consortium aims to understand how genomic variation affects genome function, which in turn impacts phenotype. The NHGRI is funding this collaborative program that brings together teams of investigators who will use state-of-the-art experimental and computational approaches to model, predict, characterize and map genome function, how genome function shapes phenotype, and how these processes are affected by genomic variation. These joint efforts will produce a catalog of the impact of genomic variants on genome function and phenotypes.
    The Data Corpus consists of single-cell Genomics experiments (both single modal, and multimodal, typically snRNA-seq and snATAC-seq), Characterization experiments using Massively Parallel Reporter Assays (MPRAs) and CRISPR-screens along with a variety of protein mutatation assays, and Predictive Models. There are a huge variety of files in IGVF that are stored in the AWS OpenData Set so we recommend using the metadata file  or browsing the IGVF Data Portal 

    Features and programs

    Open Data Sponsorship Program

    This dataset is part of the Open Data Sponsorship Program, an AWS program that covers the cost of storage for publicly available high-value cloud-optimized datasets.

    Pricing

    This is a publicly available data set. No subscription is required.

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    Usage information

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    Delivery details

    AWS Data Exchange (ADX)

    AWS Data Exchange is a service that helps AWS easily share and manage data entitlements from other organizations at scale.

    Open data resources

    Available with or without an AWS account.

    How to use
    To access these resources, reference the Amazon Resource Name (ARN) using the AWS Command Line Interface (CLI). Learn more 
    Description
    Released and Archived IGVF Data Files
    Resource type
    S3 bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::igvf-public
    AWS region
    us-west-2
    AWS CLI access (No AWS account required)
    aws s3 ls --no-sign-request s3://igvf-public/
    Description
    Notifications for new IGVF data
    Resource type
    SNS topic
    Amazon Resource Name (ARN)
    arn:aws:sns:us-west-2:407227577691:igvf-public-object_created
    AWS region
    us-west-2

    Resources

    Support

    Managed By

    IGVF Data Administration and Coordination Center at Stanford University

    How to cite

    The Impact of Variation on Function Consortium (IGVF) was accessed on DATE from https://registry.opendata.aws/igvf-consortium .

    License

    CC BY 4.0 - https://creativecommons.org/licenses/by/4.0/  - You are free to share and adapt this data with proper attribution