Sold by: Toyoko
Open data
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Deployed on AWS
Co-managed by [Toyoko](toyoko.io) and the [Structural Biology Group at the Universidad Nacional de Quilmes](http://ufq.unq.edu.ar/sbg/), this dataset allows us to explore the conformational space of all possible peptides using the 20 common amino acids. It consists of a collection of exhaustive molecular dynamics simulations of tripeptides and pentapeptides.
Overview
Co-managed by Toyoko and the Structural Biology Group at the Universidad Nacional de Quilmes , this dataset allows us to explore the conformational space of all possible peptides using the 20 common amino acids. It consists of a collection of exhaustive molecular dynamics simulations of tripeptides and pentapeptides.
Features and programs
Open Data Sponsorship Program
This dataset is part of the Open Data Sponsorship Program, an AWS program that covers the cost of storage for publicly available high-value cloud-optimized datasets.
Pricing
This is a publicly available data set. No subscription is required.
Legal
Content disclaimer
Vendors are responsible for their product descriptions and other product content. AWS does not warrant that vendors' product descriptions or other product content are accurate, complete, reliable, current, or error-free.
Delivery details
AWS Data Exchange (ADX)
AWS Data Exchange is a service that helps AWS easily share and manage data entitlements from other organizations at scale.
Open data resources
Available with or without an AWS account.
- How to use
- To access these resources, reference the Amazon Resource Name (ARN) using the AWS Command Line Interface (CLI). Learn more
- Description
- Tri-peptides. All possible 8000 tri-peptides, 2 replicas. File types: Amber .out, .traj and .crd. To retrieve files use this format: N{AA}{AA}C{AA}-R{replic_number}.dmd.1.{ext}, for example, for ALA-SER-ASN traj file for replica 2, the name is NALASERCASN-R2.dmd.1.traj
- Resource type
- S3 bucket
- Amazon Resource Name (ARN)
- arn:aws:s3:::toyokounqpeptides/tripep/
- AWS region
- us-west-2
- AWS CLI access (No AWS account required)
- aws s3 ls --no-sign-request s3://toyokounqpeptides/tripep//
- Description
- Penta-peptides. All possible 3200000 penta-peptides, no replicas. File types: .tar.bz2. To retrieve files use this format: N{AA}{AA}{AA}{AA}C{AA}-R1.tar.bz2
- Resource type
- S3 bucket
- Amazon Resource Name (ARN)
- arn:aws:s3:::toyokounqpeptides/5pep/
- AWS region
- us-west-2
- AWS CLI access (No AWS account required)
- aws s3 ls --no-sign-request s3://toyokounqpeptides/5pep//
Resources
Vendor resources
Support
Contact
Managed By
How to cite
Conformational Space of Short Peptides was accessed on DATE from https://registry.opendata.aws/short_peptides .
License
CC-BY 4.0 See https://github.com/ToyokoLabs/SBG/blob/master/LICENSE
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