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    PubSeq - Public Sequence Resource

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    Sold by: UTHSC GeneNetwork 
    Open data
    |
    Deployed on AWS
    COVID-19 PubSeq is a free and open online bioinformatics public sequence resource with on-the-fly analysis of sequenced SARS-CoV-2 samples that allows for a quick turnaround in identification of new virus strains. PubSeq allows anyone to upload sequence material in the form of FASTA or FASTQ files with accompanying metadata through the web interface or REST API.

    Overview

    COVID-19 PubSeq is a free and open online bioinformatics public sequence resource with on-the-fly analysis of sequenced SARS-CoV-2 samples that allows for a quick turnaround in identification of new virus strains. PubSeq allows anyone to upload sequence material in the form of FASTA or FASTQ files with accompanying metadata through the web interface or REST API.

    Features and programs

    Open Data Sponsorship Program

    This dataset is part of the Open Data Sponsorship Program, an AWS program that covers the cost of storage for publicly available high-value cloud-optimized datasets.
    Learn more

    Pricing

    This is a publicly available data set. No subscription is required.

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    Legal

    Content disclaimer

    Vendors are responsible for their product descriptions and other product content. AWS does not warrant that vendors' product descriptions or other product content are accurate, complete, reliable, current, or error-free.

    Usage information

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    Delivery details

    AWS Data Exchange (ADX)

    AWS Data Exchange is a service that helps AWS easily share and manage data entitlements from other organizations at scale.

    Open data resources

    Available with or without an AWS account.

    How to use
    To access these resources, reference the Amazon Resource Name (ARN) using the AWS Command Line Interface (CLI). Learn more 
    Description
    PubSeq submitted datasets (FASTA and JSON metadata)
    Resource type
    S3 bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::pubseq-datasets
    AWS region
    us-east-2
    AWS CLI access (No AWS account required)
    aws s3 ls --no-sign-request s3://pubseq-datasets/
    Description
    Pubseq output data (Arvados Keep)
    Resource type
    S3 bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::pubseq-output-data
    AWS region
    us-east-2
    AWS CLI access (No AWS account required)
    aws s3 ls --no-sign-request s3://pubseq-output-data/

    Resources

    Vendor resources

    View this dataset on Github 

    Support

    Contact

    https://covid19.genenetwork.org/contact 

    Managed By

    UTHSC GeneNetwork 

    How to cite

    PubSeq - Public Sequence Resource was accessed on DATE from https://registry.opendata.aws/pubseq .

    License

    Creative Commons Attribution 4.0 International (CC BY 4.0) unless otherwise specified.