Sold by: Broad Institute
Open data
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Deployed on AWS
This dataset consists of whole genome sequencing (WGS), whole exome sequencing (WES), and RNA sequencing files generated from ~1000 cancer cell lines described in Ghandi et al., 2019.
Overview
This dataset consists of whole genome sequencing (WGS), whole exome sequencing (WES), and RNA sequencing files generated from ~1000 cancer cell lines described in Ghandi et al., 2019.
Features and programs
Open Data Sponsorship Program
This dataset is part of the Open Data Sponsorship Program, an AWS program that covers the cost of storage for publicly available high-value cloud-optimized datasets.
Pricing
This is a publicly available data set. No subscription is required.
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Delivery details
AWS Data Exchange (ADX)
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Open data resources
Available with or without an AWS account.
- How to use
- To access these resources, reference the Amazon Resource Name (ARN) using the AWS Command Line Interface (CLI). Learn more
- Description
- CRAM/BAM files (and their corresponding CRAI/BAI indexes) for RNA, WES, and WGS samples released by The Cancer Dependency Map (DepMap) as part of the Cancer Cell Line Encyclopedia (CCLE) project
- Resource type
- S3 bucket
- Amazon Resource Name (ARN)
- arn:aws:s3:::depmap-omics-ccle
- AWS region
- us-east-1
- AWS CLI access (No AWS account required)
- aws s3 ls --no-sign-request s3://depmap-omics-ccle/
- Description
- Notifications for new depmap-omics-ccle data
- Resource type
- SNS topic
- Amazon Resource Name (ARN)
- arn:aws:sns:us-east-1:019511184952:depmap-omics-ccle-object_created
- AWS region
- us-east-1
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How to cite
The Cancer Dependency Map (DepMap) Cancer Cell Line Encyclopedia (CCLE) Dataset was accessed on DATE from https://registry.opendata.aws/depmap-omics-ccle .
License
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Similar products
The Cancer Cell Line Encyclopedia (CCLE) project is an effort to conduct a detailed genetic
characterization of a large panel of human cancer cell lines. The CCLE provides public access to
genomic data, visualization and analysis for over 1100 cancer cell lines. This dataset contains
RNA-Seq Aligned Reads, WXS Aligned Reads, and WGS Aligned Reads data.