
Single-Cell Atlas of Human Blood During Healthy Aging
Provided by: Sage Bionetworks, part of the AWS Open Data Sponsorship Program
Provided by: Sage Bionetworks, part of the AWS Open Data Sponsorship Program

Single-Cell Atlas of Human Blood During Healthy Aging
Provided by: Sage Bionetworks, part of the AWS Open Data Sponsorship Program
Provided by: Sage Bionetworks, part of the AWS Open Data Sponsorship Program
This product is part of the AWS Open Data Sponsorship Program and contains data sets that are publicly available for anyone to access and use. No subscription is required. Unless specifically stated in the applicable data set documentation, data sets available through the AWS Open Data Sponsorship Program are not provided and maintained by AWS.
Description
Comprehensive, large-scale single-cell profiling of healthy human blood at different ages is one of the critical pending tasks required to establish a framework for systematic understanding of human aging. Here, using single-cell RNA/TCR/BCR-seq with protein feature barcoding (20 antibodies), we profiled 317 samples from 166 healthy individuals aged 25 to 85 years old drawn over 3-year period. Dataset spanning ~2 million cells describes 50 subpopulations of blood immune cells, with 14 subpopulations changing with age, including a novel NKG2C+ CD8 Tcm population that decreases with age. We describe age-associated accumulation of Th2 and HLA-DR+ memory CD4 T cells, CCR4+ CD8 Tcm cells and GZMK+ CD8 Tem cells. We validate key findings using 30-plex spectral cytometry panel. We characterize patterns of antigen receptor clonality across subpopulations of T and B cells and describe their age-dependence. Our work provides novel insights into healthy human aging and unique annotated resource of unprecedented depth.
License
[CC BY]
Documentation
How to cite
Single-Cell Atlas of Human Blood During Healthy Aging was accessed on DATE
from https://registry.opendata.aws/singlecellhumanbloodatlas .
Terekhova M, Swain A, Bohacova P, et al. Single-cell atlas of healthy human blood unveils age-related loss of NKG2C+GZMB-CD8+ memory T cells and accumulation of type 2 memory T cells. Immunity. 2023;56(12):2836-2854.e9. doi:10.1016/j.immuni.2023.10.013
Update frequency
Never
Support information
Managed by: Sage Bionetworks
Contact: martyomov@wustl.edu
General AWS Data Exchange support
Resources on AWS
Description
Raw sequencing data (fastq.gz), TCR/BCR clonotype tables (.csv), normalized counts matrix (.rds, .h5ad), UMAP coordinates (.csv), metadata (.csv), cytometry data (.fcs)
Resource type
S3 Bucket
Amazon Resource Name (ARN)
arn:aws:s3:::single.cell.human.blood.atlas.opendata.sagebase.org
AWS Region
us-east-1
Controlled access
Usage examples
Publications
- Single-cell atlas of healthy human blood unveils age-related loss of NKG2C+GZMB−CD8+ memory T cells and accumulation of type 2 memory T cells by Terekhova M, Swain A, Bohacova P, Aladyeva E, Arthur L, et al