Select your cookie preferences

We use essential cookies and similar tools that are necessary to provide our site and services. We use performance cookies to collect anonymous statistics, so we can understand how customers use our site and make improvements. Essential cookies cannot be deactivated, but you can choose “Customize” or “Decline” to decline performance cookies.

If you agree, AWS and approved third parties will also use cookies to provide useful site features, remember your preferences, and display relevant content, including relevant advertising. To accept or decline all non-essential cookies, choose “Accept” or “Decline.” To make more detailed choices, choose “Customize.”

Sign in
Your Saved List Become a Channel Partner Sell in AWS Marketplace Amazon Web Services Home Help

Single-Cell Atlas of Human Blood During Healthy Aging

Provided by: Sage Bionetworks, part of the AWS Open Data Sponsorship Program

Single-Cell Atlas of Human Blood During Healthy Aging

Provided by: Sage Bionetworks, part of the AWS Open Data Sponsorship Program

This product is part of the AWS Open Data Sponsorship Program and contains data sets that are publicly available for anyone to access and use. No subscription is required. Unless specifically stated in the applicable data set documentation, data sets available through the AWS Open Data Sponsorship Program are not provided and maintained by AWS.

Description

Comprehensive, large-scale single-cell profiling of healthy human blood at different ages is one of the critical pending tasks required to establish a framework for systematic understanding of human aging. Here, using single-cell RNA/TCR/BCR-seq with protein feature barcoding (20 antibodies), we profiled 317 samples from 166 healthy individuals aged 25 to 85 years old drawn over 3-year period. Dataset spanning ~2 million cells describes 50 subpopulations of blood immune cells, with 14 subpopulations changing with age, including a novel NKG2C+ CD8 Tcm population that decreases with age. We describe age-associated accumulation of Th2 and HLA-DR+ memory CD4 T cells, CCR4+ CD8 Tcm cells and GZMK+ CD8 Tem cells. We validate key findings using 30-plex spectral cytometry panel. We characterize patterns of antigen receptor clonality across subpopulations of T and B cells and describe their age-dependence. Our work provides novel insights into healthy human aging and unique annotated resource of unprecedented depth.

License

[CC BY]

How to cite

Single-Cell Atlas of Human Blood During Healthy Aging was accessed on DATE from https://registry.opendata.aws/singlecellhumanbloodatlas .

Terekhova M, Swain A, Bohacova P, et al. Single-cell atlas of healthy human blood unveils age-related loss of NKG2C+GZMB-CD8+ memory T cells and accumulation of type 2 memory T cells. Immunity. 2023;56(12):2836-2854.e9. doi:10.1016/j.immuni.2023.10.013

Update frequency
Never
Support information

Managed by: Sage Bionetworks

Contact: martyomov@wustl.edu

General AWS Data Exchange support

Resources on AWS

Description

Raw sequencing data (fastq.gz), TCR/BCR clonotype tables (.csv), normalized counts matrix (.rds, .h5ad), UMAP coordinates (.csv), metadata (.csv), cytometry data (.fcs)

Resource type
S3 Bucket
Amazon Resource Name (ARN)
arn:aws:s3:::single.cell.human.blood.atlas.opendata.sagebase.org
AWS Region
us-east-1