Open data
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Deployed on AWS
This study generated a collection of patient-derived pancreatic normal and cancer organoids and it was sequenced using Whole Genome Sequencing (WGS), Whole Exome Sequencing (WXS) and RNA-Seq as well as matched tumor and normal tissue if available. The study provides a valuable resource for pancreatic cancer researchers.
The dataset contains open RNA-Seq Gene Expression Quantification data and controlled WGS/WXS/RNA-Seq Aligned Reads, WXS Annotated Somatic Mutation, WXS Raw Somatic Mutation, and RNA-Seq Splice Junction Quantification.
Overview
This study generated a collection of patient-derived pancreatic normal and cancer organoids and it was sequenced using Whole Genome Sequencing (WGS), Whole Exome Sequencing (WXS) and RNA-Seq as well as matched tumor and normal tissue if available. The study provides a valuable resource for pancreatic cancer researchers. The dataset contains open RNA-Seq Gene Expression Quantification data and controlled WGS/WXS/RNA-Seq Aligned Reads, WXS Annotated Somatic Mutation, WXS Raw Somatic Mutation, and RNA-Seq Splice Junction Quantification.
Features and programs
Open Data Sponsorship Program
This dataset is part of the Open Data Sponsorship Program, an AWS program that covers the cost of storage for publicly available high-value cloud-optimized datasets.
Pricing
This is a publicly available data set. No subscription is required.
Legal
Content disclaimer
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Delivery details
AWS Data Exchange (ADX)
AWS Data Exchange is a service that helps AWS easily share and manage data entitlements from other organizations at scale.
Open data resources
Available with or without an AWS account.
- How to use
- To access these resources, reference the Amazon Resource Name (ARN) using the AWS Command Line Interface (CLI). Learn more
- Description
- RNA-Seq Gene Expression Quantification
- Resource type
- S3 bucket
- Amazon Resource Name (ARN)
- arn:aws:s3:::gdc-organoid-pancreatic-phs001611-2-open
- AWS region
- us-east-1
- AWS CLI access (No AWS account required)
- aws s3 ls --no-sign-request s3://gdc-organoid-pancreatic-phs001611-2-open/
- Description
- WGS/WXS/RNA-Seq Aligned Reads, WXS Annotated Somatic Mutation, WXS Raw Somatic Mutation, RNA-Seq Splice Junction Quantification
- Resource type
- S3 bucket
- Amazon Resource Name (ARN)
- arn:aws:s3:::gdc-organoid-pancreatic-phs001611-2-controlled
- AWS region
- us-east-1
- AWS CLI access (No AWS account required)
- aws s3 ls --no-sign-request s3://gdc-organoid-pancreatic-phs001611-2-controlled/
Resources
Vendor resources
Support
Contact
How to cite
Pancreatic Cancer Organoid Profiling was accessed on DATE from https://registry.opendata.aws/organoid-pancreatic .
License
NIH Genomic Data Sharing Policy: https://gdc.cancer.gov/access-data/data-access-policies
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Pancreatic cancer is a malignant disease that develops in the pancreas, a gland located behind the stomach. It is one of the most aggressive and lethal types of cancer. The exact cause of pancreatic cancer is unknown, but several risk factors have been identified.
Pancreatic cancer often doesn't cause symptoms in the early stages. When symptoms do occur, they can be vague and similar to other conditions. It is important to continue to improve early detection for pancreatic cancer.