Pancreatic Cancer Organoid Profiling
Provided by: Center for Translational Data Science at The University of Chicago , part of the AWS Open Data Sponsorship Program
Provided by: Center for Translational Data Science at The University of Chicago , part of the AWS Open Data Sponsorship Program
Pancreatic Cancer Organoid Profiling
Provided by: Center for Translational Data Science at The University of Chicago , part of the AWS Open Data Sponsorship Program
Provided by: Center for Translational Data Science at The University of Chicago , part of the AWS Open Data Sponsorship Program
This product is part of the AWS Open Data Sponsorship Program and contains data sets that are publicly available for anyone to access and use. No subscription is required. Unless specifically stated in the applicable data set documentation, data sets available through the AWS Open Data Sponsorship Program are not provided and maintained by AWS.
Description
This study generated a collection of patient-derived pancreatic normal and cancer organoids and it was sequenced using Whole Genome Sequencing (WGS), Whole Exome Sequencing (WXS) and RNA-Seq as well as matched tumor and normal tissue if available. The study provides a valuable resource for pancreatic cancer researchers. The dataset contains open RNA-Seq Gene Expression Quantification data and controlled WGS/WXS/RNA-Seq Aligned Reads, WXS Annotated Somatic Mutation, WXS Raw Somatic Mutation, and RNA-Seq Splice Junction Quantification.
License
NIH Genomic Data Sharing Policy: https://gdc.cancer.gov/access-data/data-access-policies
How to cite
Pancreatic Cancer Organoid Profiling was accessed on DATE from https://registry.opendata.aws/organoid-pancreatic .
Update frequency
Genomic Data Commons (GDC) is source of truth for this dataset; GDC offers monthly data releases,
although this dataset may not be updated at every release.
Support information
Contact: dcf-support@datacommons.io
General AWS Data Exchange support
Resources on AWS
Description
RNA-Seq Gene Expression Quantification
Resource type
S3 Bucket
Amazon Resource Name (ARN)
arn:aws:s3:::gdc-organoid-pancreatic-phs001611-2-openAWS Region
us-east-1AWS CLI Access (No AWS account required)
aws s3 ls --no-sign-request s3://gdc-organoid-pancreatic-phs001611-2-open/Description
WGS/WXS/RNA-Seq Aligned Reads, WXS Annotated Somatic Mutation, WXS Raw Somatic Mutation, RNA-Seq Splice Junction Quantification
Resource type
S3 Bucket
Amazon Resource Name (ARN)
arn:aws:s3:::gdc-organoid-pancreatic-phs001611-2-controlledAWS Region
us-east-1Usage examples
Publications
- Organoid Profiling Identifies Common Responders to Chemotherapy in Pancreatic Cancer by Tiriac H, Belleau P, Engle DD, Plenker D, Deschênes A, Somerville TD, et al.
Tools & Applications