Open data
|
Deployed on AWS
Genomic tools use reference databases as indexes to operate quickly and efficiently, analogous to how web search engines use indexes for fast querying. Here, we aggregate genomic, pan-genomic and metagenomic indexes for analysis of sequencing data.
Overview
Genomic tools use reference databases as indexes to operate quickly and efficiently, analogous to how web search engines use indexes for fast querying. Here, we aggregate genomic, pan-genomic and metagenomic indexes for analysis of sequencing data.
Features and programs
Open Data Sponsorship Program
This dataset is part of the Open Data Sponsorship Program, an AWS program that covers the cost of storage for publicly available high-value cloud-optimized datasets.
Pricing
This is a publicly available data set. No subscription is required.
Legal
Content disclaimer
Vendors are responsible for their product descriptions and other product content. AWS does not warrant that vendors' product descriptions or other product content are accurate, complete, reliable, current, or error-free.
Delivery details
AWS Data Exchange (ADX)
AWS Data Exchange is a service that helps AWS easily share and manage data entitlements from other organizations at scale.
Open data resources
Available with or without an AWS account.
- How to use
- To access these resources, reference the Amazon Resource Name (ARN) using the AWS Command Line Interface (CLI). Learn more
- Description
- This bucket contains genomic indexes for Bowtie, Kraken, HISAT, and Centrifuge.
- Resource type
- S3 bucket
- Amazon Resource Name (ARN)
- arn:aws:s3:::genome-idx
- AWS region
- us-east-1
- AWS CLI access (No AWS account required)
- aws s3 ls --no-sign-request s3://genome-idx/
Resources
Vendor resources
Support
Managed By
Langmead Lab at Johns Hopkins University & Kim Lab at University of Texas Southwestern
How to cite
Cloud Indexes for Bowtie, Kraken, HISAT, and Centrifuge was accessed on DATE from https://registry.opendata.aws/jhu-indexes .
License
Public Domain
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