Missing dependencies to run anaconda-navigator
Running navigator gives me error:
anaconda-navigator
Traceback (most recent call last):
File "/opt/conda/bin/anaconda-navigator", line 7, in
from anaconda_navigator.app.main import main
File "/opt/conda/lib/python3.7/site-packages/anaconda_navigator/app/main.py", line 22, in
from anaconda_navigator.utils.conda import is_conda_available
File "/opt/conda/lib/python3.7/site-packages/anaconda_navigator/utils/__init__.py", line 15, in
from qtpy.QtGui import QIcon
File "/opt/conda/lib/python3.7/site-packages/qtpy/QtGui.py", line 21, in
from PyQt5.QtGui import *
ImportError: libGL.so.1: cannot open shared object file: No such file or directory
Side note:
Cleaning/Updating all packages didn't help.
Also running conda update generated error and eventually required elevation to root. This is the permission error generated when running conda update with non-root user:
# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<
Traceback (most recent call last):
File "/opt/conda/lib/python3.7/site-packages/conda/exceptions.py", line 819, in __call__
return func(*args, **kwargs)
File "/opt/conda/lib/python3.7/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/opt/conda/lib/python3.7/site-packages/conda/cli/conda_argparse.py", line 77, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/opt/conda/lib/python3.7/site-packages/conda/cli/main_update.py", line 14, in execute
install(args, parser, 'update')
File "/opt/conda/lib/python3.7/site-packages/conda/cli/install.py", line 253, in install
handle_txn(unlink_link_transaction, prefix, args, newenv)
File "/opt/conda/lib/python3.7/site-packages/conda/cli/install.py", line 282, in handle_txn
unlink_link_transaction.execute()
File "/opt/conda/lib/python3.7/site-packages/conda/core/link.py", line 223, in execute
self.verify()
File "/opt/conda/lib/python3.7/site-packages/conda/common/io.py", line 46, in decorated
return f(*args, **kwds)
File "/opt/conda/lib/python3.7/site-packages/conda/core/link.py", line 200, in verify
self.prepare()
File "/opt/conda/lib/python3.7/site-packages/conda/core/link.py", line 192, in prepare
stp.remove_specs, stp.update_specs)
File "/opt/conda/lib/python3.7/site-packages/conda/core/link.py", line 282, in _prepare
mkdir_p(transaction_context['temp_dir'])
File "/opt/conda/lib/python3.7/site-packages/conda/gateways/disk/__init__.py", line 60, in mkdir_p
makedirs(path)
File "/opt/conda/lib/python3.7/os.py", line 221, in makedirs
mkdir(name, mode)
PermissionError: [Errno 13] Permission denied: '/opt/conda/.condatmp'
We confirmed both issues (missing libGL.so for Anaconda Navigator and being unable to update conda without escalating to root) in the 2018.12 AMI. However, the issues are fixed in the 2019.03 AMI and remain fixed in the 2019.10 and 2020.03 AMIs. If you encounter any additional issues, please create a ticket at https://github.com/continuumio/anaconda-issues so we can more quickly address it.
I'm getting the same issue a full year later.
I don't use Navigator anyway, so I think a 1-star review for missing Navigator functionality is a bit harsh. I could see it going from 5 to 4 stars due to missing Navigator. What else is wrong with it, to warrant dumping it all the way to just one star?
Like missing dependencies for Anaconda Navigator from March comment also missing dependencies for Jupyter Notebook. Anaconda installation seems not really to be supported ...
Hey there, sorry you had a bad experience with our AMI. We are working on fixing, you can probably expect a fix in the next couple of weeks. In the future, if you could log your issues on our issue tracker at https://github.com/continuumio/anaconda-issues it would be very much appreciated.