AWS HPC Blog
Tag: Drug Discovery
Customizing your HPC environment: building AMIs for AWS Parallel Computing Service
Don’t settle for one-size-fits-all HPC. Unlock the power of custom AMIs in AWS Parallel Computing Service. Discover why tailored images are crucial for security, performance, and your workflows
Best practices for running molecular dynamics simulations on AWS Graviton3E
If you run molecular dynamics simulations, you need to read this. We walk through running benchmarks of popular apps like GROMACS and LAMMPS on new Hpc7g instances and Graviton3E processors. The results – up to 35% better vector performance versus Graviton3! Learn how to optimize your own workflows.
Accelerate drug discovery with NVIDIA BioNeMo Framework on Amazon EKS
This post was contributed by Doruk Ozturk and Ankur Srivastava at AWS, and Neel Patel at NVIDIA. Introduction Drug discovery is a long and expensive process. Pharmaceutical companies must sift through thousands of compound possibilities to find potential new drugs to treat diseases. This process takes multiple years and costs billions of dollars, with the […]
Introducing new alerts to help users detect and react to blocked job queues in AWS Batch
Heads up AWS Batch users! Learn how to get notifications when your job queue gets blocked so you can quickly troubleshoot and keep your workflows moving. Details in our blog.
Accelerating molecule discovery with computational chemistry and Promethium on AWS
Interested in performing high-accuracy computational chemistry simulations faster? Check out this new post about Promethium, a solution from QC Ware that leverages AWS to accelerate simulations by up to 100x.
Slurm REST API in AWS ParallelCluster
Looking to integrate AWS ParallelCluster into an automated workflow? This post shows how to submit and monitor jobs programmatically with Slurm REST API (code examples included).
New: Research and Engineering Studio on AWS
Today we’re announcing Research and Engineering Studio on AWS, a self-service portal to help scientists and engineers access and manage virtual desktops to see their data and run their interactive applications in the cloud.
EFA: how fixing one thing, led to an improvement for … everyone
Today, we’re diving deep into the open-source frameworks that move MPI messages around, and showing you how work we did in the Open MPI and libfabrics community lead to an improvement for EFA users – and everyone else, too.
Deep-dive into Hpc7a, the newest AMD-powered member of the HPC instance family
Today we discuss the performance results we saw from the new hpc7a instance, running HPC workloads like CFD, molecular dynamics, and weather prediction codes.
Running protein structure prediction at scale using a web interface for researchers
Today, we’ll show you our open-source sample implementation of a web frontend and cloud HPC backend to support researchers using AI tools like AlphaFold for drug discovery and design.